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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCCAGCTGTGAAGGAAGCCTTTGATGTTGCATATGACAATATATATGCCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtgcctcaaagttcccatttataaagtttcaccttttctataggctcaatgttgattgtgtatgctcttttcgttaatatgtgaag

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 4
TGATCCAGCTGTGAAGGAAGCCTTTGATGTTGCATATGACAATATATATGCCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtgcctcaaagttcccattta--taaagtttca------ccttttctataggctcaatgttgattgtgtatgctcttttcgtta-atatgt-gaag
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||  | ||||| ||||| ||||| |||||||||||||||      |    | |||||||||  |  | || ||      ||||| |  |   ||||    |  |    | ||  || |||  |  || ||| ||||
TGATCCAGCTGTGAAGGAAGCCTTTGATGTGGCATATGACAACATTTATGCCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagacccattt-gttgatcccatttagctctaattccatccctgcctttaccttcctctcataccttttgacttgtgaactcttccctggatgtgttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758985|gb|DY687956.1|DY687956
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: gi|71774596|gb|DR972474.1|DR972474
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: gi|76012899|gb|DT940069.1|DT940069
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: gi|37422448|gb|CF648934.1|CF648934
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: gi|211215840|gb|FL096753.1|FL096753
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: gi|211320051|gb|FL096754.1|FL096754
EST:     CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA                         GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT