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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCGGTAGCTCCGAGAAGAGGACCACCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAATgtgagcaagcaaactgaacccggaccttttgtgatgtgacggtacttttttctttttgcctgtagaaactaatctagtgagatgaactgccatttcag

Basic information

species Zea mays
transcript GRMZM2G057067_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10191623|gb|BE761699.1|BE761699
EST:     CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAAT                         ATGCATGCCGAGATAAATAGATATTTTGTAAATTAGGCTACCAATACCATG
genomic: CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAATgtgagcaagc ... gccatttcagATGCATGCCGAGGTCC-TGGATATTTTGTAAATTAGGCTACCAATACCATG
EST: gi|16377148|gb|BI991790.1|BI991790
EST:     CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAAT                         ATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGC
genomic: CCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAATgtgagcaagc ... gccatttcagATGCATGCCGAGGTCCTGGATATTTTGTAAATTAGGCTACCAATACCATGC