1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAAGAATCAAATGAAAGTGTGAAACCTCAAAGGGTTGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAGgtaactcattatagataacttagcactggtttagtttaagaacttatgggcatcattcctttgcttacactatcctgcaatgatatag
species | Zea mays |
transcript | GRMZM2G056166_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAACGAAGAGAG TTTTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAATTAGAGAAAAGCEST: gi|6022573|gb|AW067385.1|AW067385
genomic: AAAACGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGC
EST: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAG TTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGCEST: gi|149096714|gb|EE182487.2|EE182487
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGC
EST: AAAACGGAAGAGAG TTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGEST: gi|211309531|gb|FL415789.1|FL415789
genomic: AAAAC-GAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAG
EST: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAG TTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGC
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTAGAGAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAATCAAATGAAAGTGTGAAACCTCAAAGGGTTGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAACGAAGAGAGgtaactcattatagataacttagcactggtttagtttaagaacttatgggcatcattcctttgcttacactatcctgcaatgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA