1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGCGTCTGACATGGTGTTGGCTGACGACAATTTTAGCACCATAGTTTCTGCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctgagcttgctttgattattgttcacactttgtagtactcgtacttttcgcccccttcccttgtgggcattcttgacgtccctgtcttcctcggctgccgcag
species | Zea mays |
transcript | GRMZM2G056014_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAG ATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTCEST: gi|19437077|gb|BM953487.1|BM953487
genomic: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctg ... gctgccgcagATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTC
EST: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAG ATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTCEST: gi|211330037|gb|FL163566.1|FL163566
genomic: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctg ... gctgccgcagATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTC
EST: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAG ATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTC
genomic: GCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctg ... gctgccgcagATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCGTCTGACATGGTGTTGGCTGACGACAATTTTAGCACCATAGTTTCTGCAGTCGGTGAAGGAAGATCGATCTACAACAACATGAAAGCTTTCATAAGgtctgtgctgagcttgctttgattattgttcacactttgtagtactcgtacttttcgcccccttcccttgtgggcattcttgacgtccctgtcttcctcggctgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA