1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGACATGTCTACGAACTCAAGGGACCTCATAGAGCGAGAATTAGCTGCATTTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGgttagtagtgttatatgtttaaattgattagttccaaaataatatctgtctgctatgttcctatatcagtatttgtttgtatccgcttcacctgaatgaa...
species | Zea mays |
transcript | GRMZM2G055917_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAG GCCCTTTTGGAGGCCGTGGGTTCTAACGGGCATGACAGEST: gi|78112547|gb|DV530941.1|DV530941
genomic: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGgttagtagtg ... cctactgtagGCCCTTTTGGAGGCCGTGGGTTCTAACGG-CATGACAG
EST: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAG GCCCTTTTGGAGGCCGTGGGTTCTAACGGCATGACAGGATCAGAAGCACTTEST: gi|211028061|gb|FL201185.1|FL201185
genomic: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGgttagtagtg ... cctactgtagGCCCTTTTGGAGGCCGTGGGTTCTAACGGCATGACAGGATCAGAAGCACTT
EST: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAG -CCCTTTTGGAGGCCGTGGGTTCT
genomic: TTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGgttagtagtg ... cctactgtagGCCCTTTTGGAGGCCGTGGGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACATGTCTACGAACTCAAGGGACCTCATAGAGCGAGAATTAGCTGCATTTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGgttagtagtgttatatgtttaaattgattagttccaaaataatatctgtctgctatgttcctatatcagtatttgtttgtatccgcttcacctgaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaataa