1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCAGAAACATCGAGAAGGCCATCAGAGATTGCTTGGACCACTTCAAGAGTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaacacaattagatgtcctactgaaaaaaaaatccattattacgtgcttgggttaactaatatcaatggcatctcttgtttcgggcacgcag
species | Zea mays |
transcript | GRMZM2G055607_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|71305859|gb|DR789055.1|DR789055
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|84969427|gb|DW467864.1|DW467864
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: CAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|76911990|gb|DV164524.1|DV164524
genomic: CAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCGGGGTCCCGGTGAGGAGGCTGATGEST: gi|71315790|gb|DR794540.1|DR794540
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|50330183|gb|CO525309.1|CO525309
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|31406257|gb|CD484989.1|CD484989
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|89247114|gb|DY618900.1|DY618900
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATGEST: gi|71762875|gb|DR960812.1|DR960812
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
EST: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAAT GCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
genomic: GTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaaca ... gggcacgcagGCATTATCCCGGGTGCAAGAGTTCCTCAGGGTCCCGGTGAGGAGGCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAGAAACATCGAGAAGGCCATCAGAGATTGCTTGGACCACTTCAAGAGTACGCGGCACATGATCCTCTATTATGAGGATATAATCAGCAACAGCAATgtactgaacacaattagatgtcctactgaaaaaaaaatccattattacgtgcttgggttaactaatatcaatggcatctcttgtttcgggcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT