1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTATATTGAGTCGTCTGTTGAAGGACCCCATTGTGGGCTTTTCCCTGTTGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttctttgtgctctgttggccataaacgtgtagaagttctggattgaattaatggattattggactcatctaacaaatcaaattgatatatattg...
species | Zea mays |
transcript | GRMZM2G055458_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|93014428|gb|EB639948.1|EB639948
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|6095651|gb|AW120318.1|AW120318
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: GGAGCACCATCANACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACCATTGTGEST: gi|32926190|gb|CF031002.1|CF031002
genomic: GGAGCACCATCA-ACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAA-CATTGTG
EST: TGGGGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|78022577|gb|DV490964.1|DV490964
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|32925170|gb|CF029982.1|CF029982
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|101387488|gb|EB815759.1|EB815759
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|74243578|gb|DT651492.1|DT651492
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: AACAACTACTGGCCTGAAATGGAATTTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|6020450|gb|AW065378.1|AW065378
genomic: AACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|32925551|gb|CF030363.1|CF030363
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|5762179|gb|AI967227.1|AI967227
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|32926935|gb|CF031747.1|CF031747
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|211148272|gb|FL467064.1|FL467064
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|50337458|gb|CO532584.1|CO532584
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|32926208|gb|CF031020.1|CF031020
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|16926658|gb|BM079726.1|BM079726
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGCEST: gi|32926302|gb|CF031114.1|CF031114
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
EST: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAA GTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
genomic: TGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttct ... ccacttccagGTGAATCAAAGATGAGATTTGGGAGCATGATAAGCACATCCAACATTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTATATTGAGTCGTCTGTTGAAGGACCCCATTGTGGGCTTTTCCCTGTTGGAGCACCATCAACAAGCACAACAACTACTGGCCTGAAATGGAATCTAAgtaaatttctttgtgctctgttggccataaacgtgtagaagttctggattgaattaatggattattggactcatctaacaaatcaaattgatatatattg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA