1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGGATGGCGCATTCCACAAGAAGTTAAATGCTAGTGGGATCTATACAGTTGAAGATTTCCTCCAGCTTCTTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttctatgataccttattgtgatttatggtatttcctatatgatttgacaccccttgttcttttttgtag
species | Zea mays |
transcript | GRMZM2G054109_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTTAGGGATCAGCAGAGATTACGTAGC ATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCATEST: gi|211080474|gb|FK973123.1|FK973123
genomic: TTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttcta ... ttttttgtagATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCAT
EST: TTGAAGATTTCCTCCAGCTTCTTGTTAGGGATCAGCAGAGATTACGTAGC ATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCATEST: gi|211080473|gb|FK973122.1|FK973122
genomic: TTGAAGATTTCCTCCAGCTTCTTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttcta ... ttttttgtagATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCAT
EST: TTGTTAGGGATCAGCAGAGATTACGTAGC ATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCATEST: gi|211080475|gb|FK973124.1|FK973124
genomic: TTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttcta ... ttttttgtagATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCAT
EST: TTGTTAGGGATCAGCAGAGATTACGTAGC ATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCAT
genomic: TTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttcta ... ttttttgtagATTCTGGGCAGTGGAATGTCAAATAAGATGTGGGACAGCCTTGTTGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGATGGCGCATTCCACAAGAAGTTAAATGCTAGTGGGATCTATACAGTTGAAGATTTCCTCCAGCTTCTTGTTAGGGATCAGCAGAGATTACGTAGCgtaagttctatgataccttattgtgatttatggtatttcctatatgatttgacaccccttgttcttttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA