1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATCGGATTCATCATCCCATTCCCATTCAGATAGAGAATATATGGATCCAGATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccctaattcatcttgataattagctcttgtagaattaaatgaaaacttgattttattttaaacattttgcagcaggaatcataaatatggattttgtgttgaatgcag
species | Zea mays |
transcript | GRMZM2G052699_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATAACGTGGAGGAAAT-TTTGAGGATGGGTGTGCGCTTCTTTCTAGACG GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCEST: gi|31356932|gb|CD441289.1|CD441289
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCEST: gi|32800093|gb|CD952329.1|CD952329
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCEST: gi|71432148|gb|DR813198.1|DR813198
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCEST: gi|71435075|gb|DR816125.1|DR816125
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCGGATTCATCATCCCATTCCCATTCAGATAGAGAATATATGGATCCAGATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccctaattcatcttgataattagctcttgtagaattaaatgaaaacttgattttattttaaacattttgcagcaggaatcataaatatggattttgtgttgaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG