1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTAAACAGCATACTTTGGTATCTGGTGGTGTTAGAGGAACCTTACCATGGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAGgtaagactgctttgtcttgtaagtacatttaataaaccctattaaacaatgctccacttttttgtattctgacaaaaaactatttctatgtatcttgtag
species | Zea mays |
transcript | GRMZM2G052658_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAG ATTGATGTCTATTCGTTTGGAATTGTCATGTGGGAGTTGCTTACTGGGGAAEST: gi|74237122|gb|DT645036.1|DT645036
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAGgtaagactgc ... tatcttgtagATTGATGTCTATTCGTTTGGAATTGTCATGTGGGAGTTGCTTACTGGGGAA
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAG ATTGATGTCTATTEST: gi|116814956|gb|EC857584.1|EC857584
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAGgtaagactgc ... tatcttgtagATTGATGTCTATT
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAG ATTGATGTCTATTCGTTTGGAATTGTCATGTGGGAGTTGCTTACTGGGGAA
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAGgtaagactgc ... tatcttgtagATTGATGTCTATTCGTTTGGAATTGTCATGTGGGAGTTGCTTACTGGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTAAACAGCATACTTTGGTATCTGGTGGTGTTAGAGGAACCTTACCATGGATGGCACCAGAGCTTCTGAGTGGGAAAAGTAATATGGTGTCAGACAAGgtaagactgctttgtcttgtaagtacatttaataaaccctattaaacaatgctccacttttttgtattctgacaaaaaactatttctatgtatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT