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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGTATGCTGACCCTACTCACTCATCGTATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaacccttatactggacataaattttgcatgctgtgtagtttatgttccccaaccccaacgtatacataaacggttctttccatcatttcatag

Basic information

species Zea mays
transcript GRMZM2G052479_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148961906|gb|EE012693.2|EE012693
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|94472720|gb|EB701678.1|EB701678
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|211089074|gb|FL456421.1|FL456421
EST:     TGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: TGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|149098517|gb|EE184497.2|EE184497
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|148938520|gb|EC882841.2|EC882841
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|101386886|gb|EB815460.1|EB815460
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
EST: gi|71760018|gb|DR957955.1|DR957955
EST:     ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCG                         GCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG
genomic: ATGACGCTCTTGAATTTGCATTCGGGTTGTTCTCCACCTTTACGCCCGCGgtaaccctta ... catttcatagGCTGGCCTCAAGATAATACAGTTGTACAGGGAAGGATACAGGCAGGACTGG