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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGGACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAGgtagcggttagtatctgttgtctaaatatgctttgatagtcttatttgttgctactgaaagaattgatgcagagtctacgtctacatacttctatcgtactcatgtccatagtactcagcacattgtcaaagcattccagttgtcagtacttttcagttacaaatatttatataggttttttcaatggttgtttgaag

Basic information

species Zea mays
transcript GRMZM2G051138_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 5'ss of exon 6
GCAACTGTGAGAGCAATTGCTGATGACCTTGGAGCAGACTTATGTGAGTGGACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAGgtagcggttagtatctgttgtctaaatatgctttgata-gtcttatttgttgctactgaaagaattgatgcagagtctacgtctacatacttctatcgtactcatgtc-catagtactcagcacattgtcaaagcatt--ccagttgtcagtacttttcagttacaaatatttatataggttttttcaatggttgtttgaag
|||||| | | ||||||||||| ||| |||||||  ||  |||||||||||||  | |||||||| ||||| ||| | |||||| | |||||||| ||||||| |   ||   | ||  |  ||||||| || |  |  |    |    ||| | |     || ||     | |       |  |   | | |   |||    ||      |||||||||| |   |   | |||| |  | | |||  |  || |  ||||||    | |||       || |||||||| |  |||||||
GCAACTATCAAAGCAATTGCTGCTGAGCTTGGAGTTGAGATATGTGAGTGGACAGCCCCAGTACCGACACTATGGACAGAACATTTGCATGCTAACTCAGgtatca--tatgttttgaggcttaaatattctctcttttgctccaaaaattgtttccagctgacttctgataaaa---gtatggatgaagtccatgcgtttctatacaatttagtactcagtatgctagtatagcacttgcaacttgcaatcacgtcccagttat---ttttt-------ttctttcaatgatcatttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969297|gb|EE020069.2|EE020069
EST:     GACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAG                         GATTACGCTATACATCCAAGCTTGAAGAATTTGAAACTTTTGTAGAGAAGA
genomic: GACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAGgtagcggtta ... ttgtttgaagGATTACGCTATACATCCAAGCTTGAAGAATTTGAAACTTTTGTAGAGAAGA
EST: gi|78079477|gb|DV507889.1|DV507889
EST:     GACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAG                         GATTACGCTATACATCCAAGCTTGAAGAATTTGAAACTTTTGTAGAGAAGA
genomic: GACGACTCCAGTACCAACACTGTGGGCTGAACATGTTCATGCTAATTCAGgtagcggtta ... ttgtttgaagGATTACGCTATACATCCAAGCTTGAAGAATTTGAAACTTTTGTAGAGAAGA