1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTATGACTCTACTCATGGCCCGTTTAAAGGTTCTATTTGTGTTGTGGATGATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttgattgaggtcacatcagtatcttatttgcctattgtacatgacattgttatattgcagttgtgctagtaagcttggatttggtgaatacttg...
species | Zea mays |
transcript | GRMZM2G051004_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGAAGGTCACAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGAEST: gi|31611887|gb|CD568509.1|CD568509
genomic: GGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
EST: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGAEST: gi|31612121|gb|CD568743.1|CD568743
genomic: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
EST: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGAEST: gi|166449651|gb|EG092831.1|EG092831
genomic: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
EST: CAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGAEST: gi|31664252|gb|CD572977.1|CD572977
genomic: CAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
EST: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGAEST: gi|29946974|gb|CB816419.1|CB816419
genomic: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
EST: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAG AGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
genomic: GATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttga ... aacattccagAGATCCTGCAGAGATTCCATGGGGTAACTTTGGGGCTGAATATGTTGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTATGACTCTACTCATGGCCCGTTTAAAGGTTCTATTTGTGTTGTGGATGATTCAACCCTGGAGATCAATGGGAAGAAGGTCACAATTACAAGCAAAAGgtaatgttgattgaggtcacatcagtatcttatttgcctattgtacatgacattgttatattgcagttgtgctagtaagcttggatttggtgaatacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA