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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGTGGCTCTGCGGTGCGTAGACCCTGAAGCTCGCAAGAGGCCAAAGATTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaagatggcatgtgcacacttttgagtacccattgtctcagtatgttaatttgttttgactttattgcccataaatcttgttgtccaccaactc...

Basic information

species Zea mays
transcript GRMZM2G050861_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050861_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g35080.1 (Oryza sativa), 5'ss of exon 6
GCTAGTGGCTCTGCGGTGCGTAGACCCTGAAGCTCGCAAGAGGCCAAAGATTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaagatggcatgtgcacacttttg----------agtacccattgtctcagtatgttaatttgttttgactttattgcccataaatcttgttgtccaccaactc
| |||| |||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||  |||||||||    ||||||          |||||||||  | | | |||  | |    | |   | | |||  | ||   |  ||| | ||        
GTTAGTAGCTCTGCGATGTGTAGACCCAGAAGCCCGTAAGAGGCCAAAGATTGGGCATGTCATTCACATGCTTGAAGTTGATGATTTTCCCTACAGAGATgtaagttaacgtggcatgtggctccttttgtcttatgttcagtacccatcatttta-tatagtgaaaattgtgagcatcatttgcaatgc-ttgtgtggccc--------

upper sequence: GRMZM2G050861_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g10310.t01 (Vitis vinifera), 5'ss of exon 6
GCTAGTGGCTCTGCGGTGCGTAGACCCTGAAGCTCGCAAGAGGCCAAAGATTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaagatggcatgtgca-cacttttgagtacccattgtctcagtatgttaatttgttttgactttattgcccataaatcttgttgtccaccaactc------
  |||||||| |||| ||||| |||||  | || |  |||||||||||||| |||||||| ||||| |||||||| | ||| |||||||| | | |||||||||| | | ||    | |||| ||   |||    ||| |  |  || |       |   | ||     |  |||  || ||  | | |||  | ||          
TTTAGTGGCTTTGCGCTGCGTGGACCCAAATGCCCAGAAGAGGCCAAAGATGGGGCATGTGATTCATATGCTTGAAGCTGATGATTTCCCCTTCCGAGATgtaagattacattctttttgcagcaaaattgttctcccttgattgcatt-------tccatcttcgtcatgctgcttatgaagttagctgtgtagcattctttcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67012855|gb|CO441604.1|CO441604
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|6601756|gb|AW256197.1|AW256197
EST:     GATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: GATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|6760613|gb|AW324712.1|AW324712
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTTCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|71762004|gb|DR959941.1|DR959941
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|6742388|gb|AW313203.1|AW313203
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTTCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|76011103|gb|DT938273.1|DT938273
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|50327546|gb|CO522672.1|CO522672
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
EST: gi|78087662|gb|DV516055.1|DV516055
EST:     TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGAT                         GAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA
genomic: TTGGGCATGTCATTCACATGCTTGAGGTTGACGATTTCCCGTACAGAGATgtaagttaag ... ctctccccagGAGCGCCGGGGTGGCAAAGCTCCAGCCCAAGCAAGATCGGTGGAAACGCCA