1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTATGATAACATTACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatgtcataaccacataagtactcaaatagtctgtaaccacgtatgttctttgttatattgatccctttggtacacttgttgcccaactatgga...
species | Zea mays |
transcript | GRMZM2G050658_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|38229749|gb|CF920062.1|CF920062
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|78103665|gb|DV522093.1|DV522093
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|211132096|gb|FL293580.1|FL293580
genomic: GAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|149072273|gb|EE160529.2|EE160529
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|13178326|gb|BG349584.1|BG349584
genomic: GGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|13178327|gb|BG349585.1|BG349585
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|211413509|gb|FK952159.1|FK952159
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|86471570|gb|DY237940.1|DY237940
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|34391242|gb|CF384470.1|CF384470
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatg ... actacttcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATGATAACATTACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACAGTTCATgtaagtaatgtcataaccacataagtactcaaatagtctgtaaccacgtatgttctttgttatattgatccctttggtacacttgttgcccaactatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA