Sequence
atgc intronic sequence ATGC exonic sequenceCCTCTGACTCCAGAAATGATCGAGTATGCACGCACTGATGCTCACTATCTGTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTGgtatgttctaagtgctgtatcaacttttcctttcctattgtttgcttttttttgttcattggttcagtaccctcagcccctcacagatatctaatatatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G048819_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g32890.1 (Oryza sativa), 5'ss of exon 6
CCTCTGACTCCAGAAATGATCGAGTATGCACGCACTGATGCTCACTATCTGTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTGgtatgttctaagtgc-tgtatcaacttttcctttcctattgttt-gcttttttttgttcattggttcagtaccctcagcccctcacagatatc-taatatatt
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CCACTAACACCAGAAATGATTCAGTATGCCCGTTGTGATGCGCATTATCTGTTGTACATTGCAAATTGTTTGGCATCAGAGCTTCATGCAAAAACTTACGgtatgatctatgttcctatgtcgagtttccccttgcttttttggaggggaacttttcccttccaatatgtactatatgctacttttagttgttacaagat---
upper sequence: GRMZM2G048819_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv12s0059g00620.t01 (Vitis vinifera), 5'ss of exon 6
CCTCTGACTCCAGAAATGATCGAGTATGCACGCACTGATGCTCACTATCTGTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTGgtatgttctaagtgctgtatcaacttttcctttcctattgtttgctttttt-ttgt-tcattggttcagtaccctcagcccctcacagatatctaatatatt---
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CCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTGAGCTCAGGCAACATGATTCTGgtatgccttctctcttgtat-----tcttatttcttgtaagccactttatcattgtcttatttgcatgcaagtggagacactgaatgaacagataagaccctgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211165060|gb|FL318150.1|FL318150EST: GTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTG ATACTTCCAGTGATAAAATCAATTTTTTCTTCGAGGCTAGTCATCGCTCAA
genomic: GTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTGgtatgttcta ... atctaatcagATACTTCCAGTGATAAAATCAATTTTTTCTTCGAGGCTAGTCATCGCTCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCTGACTCCAGAAATGATCGAGTATGCACGCACTGATGCTCACTATCTGTTATACATTGCAAATTGTTTGGCATCAGAGCTCCATGCAAAAGCCTGTGgtatgttctaagtgctgtatcaacttttcctttcctattgtttgcttttttttgttcattggttcagtaccctcagcccctcacagatatctaatatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcccc