1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaactattatggatcaagttcgtttcaatccaagccgttgatgtgctagctgttggcacagcagctttgatgtgggctgtggtcacattatctc...
species | Zea mays |
transcript | GRMZM2G048045_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAA CACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGATEST: gi|33101585|gb|CF061545.1|CF061545
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGAT
EST: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAA CACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGATEST: gi|211109347|gb|FL402577.1|FL402577
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGAT
EST: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAA CACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGAEST: gi|71332422|gb|DR803167.1|DR803167
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGA
EST: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAA CACCTTGATCGGGAAGGTATTAGTTTTTGCTGGCGAACAACTTATGEST: gi|211169918|gb|FL423118.1|FL423118
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATG
EST: GGGACA-TT-ACTGGTAGCTGGTGGGTT-CAGGGA-AGCTGATCTGTAA- CACCTTGATCGGEST: gi|71320210|gb|DR796860.1|DR796860
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGG
EST: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAA CACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGAT
genomic: AGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaac ... tcatatgcagCACCTTGATCGGGAAGGTATTAGTTTTTGCTGTCGAACAACTTATGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTATCAGAGGGTTTTTATCAGACTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGTGGGTTTCAAGGAGAGCTGATCTGTAAAgtaagttaactattatggatcaagttcgtttcaatccaagccgttgatgtgctagctgttggcacagcagctttgatgtgggctgtggtcacattatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT