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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaaaagctggtacctggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttatagcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcag

Basic information

species Zea mays
transcript GRMZM2G047867_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047867_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g33710.1 (Oryza sativa), 5'ss of exon 7
GTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaaaagctggtacct-ggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttat-agcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcag
|| |  ||||| ||||| ||| |  ||||  |||||||||||||||| ||||| | ||||||||||||||| |||||||| | ||| | || ||| ||||||| ||| ||| |  ||   |  |  |||||||||| |||  | ||||| |||  |    || || |                                                     
GTCTGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttagaagttcgtgccttggtggtattttctattatcgtagtattccataggatatgctacttatatttattagctgctcataccttttcatcat-----------------------------------------------

upper sequence: GRMZM2G047867_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 7
GTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaaaagctggtacctggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttatagcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcag
|| |  ||  | || || ||| | |||| | |||| ||  |||| ||||||||||  ||||||||||| |||||||||||||        | |        | || | |    | | |    || ||   ||||  ||||    | ||  | ||||   |||| || |      ||||| | |    |  || ||   ||  ||  |  |||| ||||
GTGTGTAAGAAGTTTTTCCCACAGTTATACGTTGGGTTTGAAGACCCTCGTGTCCAGCTTCATGTTGGGGATGgtatgttca--------ttctcaaaataatttcaaagagatctta----ctttatcctatgtaactag-aataatgacttcagctgcttttttccaat--atcttgctgtaccttc-ttgatttcat-tttcatgattttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71333307|gb|DR803710.1|DR803710
EST:     CCTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG                         CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: gi|5895598|gb|AW036844.1|AW036844
EST:     CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG                         CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: gi|88757916|gb|DY542057.1|DY542057
EST:     CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG                         CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: gi|5791184|gb|AI977976.1|AI977976
EST:     CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG                         CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: gi|5847488|gb|AW000567.1|AW000567
EST:     CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG                         CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG