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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtctccgtcacctgatcgcatagtgtttgctatgtttaccttagaccatattttttttccgtgtaattttgagaccacttgacatgttagttt...

Basic information

species Zea mays
transcript GRMZM2G046587_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046587_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g47600.1 (Oryza sativa), 5'ss of exon 6
GAACAAGTTGTCCCTGGGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtctccgtcacctgatcgcatagtgtttgctatgtttaccttagaccatattttttttccgtgtaatt-ttgagaccacttgacatgttagttt--
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  | |    || |||  |  | || |  | |||     |   |  ||   ||||  ||  || |   | | ||  |      |  | |  | |   |    
GAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaat---cccatcatgtccttgctttttttttagagaggggaaattcctccatccttggttacatggaagttgcttttgttagataaggtttccatgctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351061|gb|BM895593.1|BM895593
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGCAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATT
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCG-AGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATT
EST: gi|32849179|gb|CD988860.1|CD988860
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTTGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|32924525|gb|CF029337.1|CF029337
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|18168735|gb|BM338575.1|BM338575
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|76016905|gb|DT944075.1|DT944075
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGGGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|149099848|gb|EE185900.2|EE185900
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|74244615|gb|DT652529.1|DT652529
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|74244614|gb|DT652528.1|DT652528
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|13126527|gb|BG317097.1|BG317097
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGTAATAGTATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAA
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAG-AA-AG-ATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAA
EST: gi|211349013|gb|FL190902.1|FL190902
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|17931649|gb|BM268609.1|BM268609
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|60337363|gb|DN204336.1|DN204336
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|32924252|gb|CF029064.1|CF029064
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|60348368|gb|DN215341.1|DN215341
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|16919746|gb|BM074334.1|BM074334
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|16377933|gb|BI992193.1|BI992193
EST:     TTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: TTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|32831285|gb|CD970963.1|CD970963
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|13126526|gb|BG317096.1|BG317096
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|9732830|gb|BE511582.1|BE511582
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|32851273|gb|CD990954.1|CD990954
EST:     GGTGTTTCTTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
EST: gi|60354612|gb|DN221585.1|DN221585
EST:     GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAG                         GGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC
genomic: GGTGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATCGATCAGgtctagtgtc ... acatcactagGGCGAGAAAGATGATAAGATTATAGCAGTCTGTGCTGATGACCCTGAATTC