1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTGTGTATGTGCCAACAAATCATTTGTACATCGGTGATATATTTCTGGTGAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagtttggttaatatgatgcctagcatctctatattattatgtcatgtggcaactttccttgaaattcttgttacttgttttttcctatctagtcaattttgcattacaaaaaacttacgaatccatcgaatcattattgcttgctagaattgataaatcaatatattattcattcttttggtttctgcag
species | Zea mays |
transcript | GRMZM2G046098_T05 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCG AAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACEST: gi|91053372|gb|EB163790.1|EB163790
genomic: CTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagt ... gtttctgcagAAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCAC
EST: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCG AAATAATTGTTTCAGGGGGGATGACCATGCCTCAGGTGATTGCATCACTGGEST: gi|60398318|gb|DN231134.1|DN231134
genomic: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagt ... gtttctgcagAAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGG
EST: GAATTTTGAGGAGGTCATAAGACCTAATTTATTTATTCGAGAAGGAATCG AAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGGEST: gi|148944675|gb|EC889811.2|EC889811
genomic: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagt ... gtttctgcagAAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGG
EST: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCG AAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGGEST: gi|148949550|gb|EC895017.2|EC895017
genomic: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagt ... gtttctgcagAAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGG
EST: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCG AAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGG
genomic: GAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagt ... gtttctgcagAAATAATTGTTTCAGGAGGGATGACCATGCCTCAGGTGATTGCATCACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTGTATGTGCCAACAAATCATTTGTACATCGGTGATATATTTCTGGTGAACTCTGAGGAGGTCATAAGACCTAATTTATCTATTCGAGAAGGAATCGgtatggtagtttggttaatatgatgcctagcatctctatattattatgtcatgtggcaactttccttgaaattcttgttacttgttttttcctatctagtcaattttgcattacaaaaaacttacgaatccatcgaatcattattgcttgctagaattgataaatcaatatattattcattcttttggtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA