1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATATTCCAATGCAAGTTCTTGGTCCTATTTGCGGAAAGGAACTTCTGTTAGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagtcgatctcgtgatacttctccaggtggacaaaatcagatgaatcgtaatttcag
species | Zea mays |
transcript | GRMZM2G045944_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGCTGGCCAAACATCAAGTGGAGTCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGCEST: gi|31357930|gb|CD442287.1|CD442287
genomic: GTGCTGGCCAAACATCAAGTTCA-TCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
EST: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGCEST: gi|40336918|gb|CK370988.1|CK370988
genomic: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
EST: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGCEST: gi|211153265|gb|FL390948.1|FL390948
genomic: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
EST: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGCEST: gi|13557823|gb|BG549179.1|BG549179
genomic: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
EST: GTGCTGGCCATAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACTTGTAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGEST: gi|211030481|gb|FL428662.1|FL428662
genomic: GTGCTGGCCA-AACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTG-AGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTG
EST: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAG GCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
genomic: AGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagt ... gtaatttcagGCCTCTCCTACGTGAGAAATTGTCAAAGGGAAAGGATGGCTTTGTTGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATTCCAATGCAAGTTCTTGGTCCTATTTGCGGAAAGGAACTTCTGTTAGTGCTGGCCAAACATCAAGTTCATCAAATGGAACAACTGCAGGAGAAAGgtaccgtagtcgatctcgtgatacttctccaggtggacaaaatcagatgaatcgtaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA