1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgccataacctggataagagataaactctgttggcctaatatgttgttgttatgaagtaaataaacctaacttgtgttcctttgtgaattgtaacag
species | Zea mays |
transcript | GRMZM2G045366_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG AGGAATGAATTACTTGCATGAGCATAAACCTCAGGCTATCATCCATGCGTGEST: gi|71448903|gb|DR829953.1|DR829953
genomic: GGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgc ... attgtaacagAGGAATGAATTACTTGCATGAGCATAAACCTCAGGCTATCATCCAT-CGTG
EST: GAGCTCTGCCCAC-ATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG AGGAATGAATTACTTGCATGEST: gi|76287394|gb|DV026962.1|DV026962
genomic: GAGCTCTGCC-ACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgc ... attgtaacagAGGAATGAATTACTTGCATG
EST: GGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAG AGGAATGAATTACTTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGA
genomic: GGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgc ... attgtaacagAGGAATGAATTACTTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgccataacctggataagagataaactctgttggcctaatatgttgttgttatgaagtaaataaacctaacttgtgttcctttgtgaattgtaacag
- - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG