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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtgcttggaagtttacctgaactaacatgtccattgtaatgcctctgcctctggtactagataggtgcatactacgcgatcaacagatctatt...

Basic information

species Zea mays
transcript GRMZM2G045331_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 7
TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtgcttggaagtttacctgaactaa-catgtccattgtaatgcctctgcctctggtacta-gataggtgcatactacgcgatcaacagatctatt
|||  ||||||||||||| ||| | || ||||||||||| || ||||||||||| |||||  | || || ||| |||| ||||| ||||| ||||| |||||||||  |   || |   |||| |||  ||| | | |  |  || || |            || ||  || |   |||   |     || |     | || 
TCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGgtaattcatctatgtag--ttacatgagttaatcgtttaaacagtgatacgaacatgatatatattacaattgacacatttcagtaattctattctgccatc

upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g37790.1 (Oryza sativa), 5'ss of exon 7
TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtgcttggaagtttacctgaactaa-catgtccattgtaatgcctctgcctctggtacta-gataggtgcatactacgcgatcaacagatctatt
|||  ||||||||||||| ||| | || ||||||||||| || ||||||||||| |||||  | || || ||| |||| ||||| ||||| ||||| |||||||||  |   || |   |||| |||  ||| | | |     || || |            || ||  || |   |||   |     || |     | || 
TCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGgtaattcatctatgtag--ttacatgagttaatcgtttaaccagtgatacgaacatgatatatattacaattgacacatttcagtaattctattctgccatc

upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT5G12980.1 (Arabidopsis thaliana), 5'ss of exon 5
TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgta---atttgtgcttggaagtttacctgaactaacatgtccattgtaatgcctctgcctctggtactagataggtgcatac-tacgcgatcaacagatctatt
 ||||||||||||||  ||||| | || ||  | |||||| | ||||| |||||||||||  |||| |||||||||||||| |||||||| ||||| ||||||   |||  |  |||  |||||   |       |  ||   ||   |||  | ||||       |  ||    | | |    | || | |||| | |     
GCCATTGTACCTGTATGCTTTCTTGAATACATCAAGCAAATCAAGACCGTTTGAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTTGTTAAGgtatgtattgatatttg--agttttgtttcctcgtctagttatttagtatgtttatgccaaaaaggcaggaacacttcttttacatgctaacaactgtttgg--

upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 7
TCCATTGTACCTGTACCCTTTCCTCAACACTACCAGCAAAACGAGACCTTTTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtgcttggaagtttacctgaactaacatgtccattgtaatgcctctgcctctggtactagataggtgcatactacgcgatcaacagatctatt----
 || ||||||||||||||||||||||| || |  |||||| | || |||||||||||| | || || |||||| | || || ||||||||| | || ||||||  |||| ||||  |  |||       |||  | |   ||||  |  || | | | ||  |||| | |  |    | |     |    ||  |  |||    
ACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGgtacgttgtccttgctaagttatagtttttaaattat--gttgttgt-tctttccatatgacactaaa-atattttgatttttaaagttgcatttacatttgtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211200410|gb|FL096663.1|FL096663
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTCTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|78088708|gb|DV517101.1|DV517101
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|149048884|gb|EE048384.2|EE048384
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|31351237|gb|CD435594.1|CD435594
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTCTGGCTGCAA-CTGAAATAATTCC
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTG-CTGCAAACTGAAATAATTCC
EST: gi|78091209|gb|DV519583.1|DV519583
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|71445883|gb|DR826933.1|DR826933
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|31356490|gb|CD440847.1|CD440847
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTCTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|76936740|gb|DV174858.1|DV174858
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|31354815|gb|CD439172.1|CD439172
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTCTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
EST: gi|74233595|gb|DT641509.1|DT641509
EST:     TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAG                         GTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT
genomic: TTGAGTACCTAAGGCTTACTAGCTTGGGGGTCATTGGTGCTCTTGTCAAGgtaatttgtg ... aataatgcagGTTGATGATACTGAAGTCATCAGTTTTTTGCTGCAAACTGAAATAATTCCT