Sequence
atgc intronic sequence ATGC exonic sequenceGTGACATTTTTCCAACAAGGCACACTTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagtcttcttggacttctaactctcttttgaccctgtatagtcaggatccataatgttttgtgtttgcaacttgatctctaggagtttggctca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 7
GTGACATTTTTCCAACAAGGCACACTTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagtcttcttggacttctaactctctt----ttgaccctgtatagtcaggat-ccataatgttttgtgtttgcaacttgatctctaggagtttggctca
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GTGACATTTTTCCAACAAGGCACCCTTCCATGTGTTTCTGCTGATGGCAGATTTATTATGGAGACACCATACAAGgtaccatcttcta-ttatttttctaatcttccactgattgatcttgtattactaggaggtgatactgcggtttgta-acaacttgattttc--gagtttgacac-
upper sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G26240.1 (Glycine max), 5'ss of exon 7
GTGACATTTTTCCAACAAGGCACACTTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtac---tacagtcttcttggacttctaactctcttttgaccctgtatagtcaggatccataatgttttgtgtttgcaacttgatctctaggagtttggctca---
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GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATACAGGgtatactctcattctttactgagctgtaaatatatttt---cttctcttttttgctttcttaaatttatgtaaactaaa---aacatagaaaaatgagggtaccaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32941368|gb|CF046187.1|CF046187EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGACATTTTTCCAACAAGGCACACTTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagtcttcttggacttctaactctcttttgaccctgtatagtcaggatccataatgttttgtgtttgcaacttgatctctaggagtttggctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA