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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTTGGCATCGCCTATGGCTTCCTCGCTGCAACCATGGCGGTCCAGAGGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaacttccttctgtagatcagtacttttatagtattaaggacaagcaatatgtatattcacttgaaccattcaaattataagcgttgaagcacgtcaatcatgtgaagatcttaattattgcacggctaatttttggaggcagctgaacctttcactaatgatatgcag

Basic information

species Zea mays
transcript GRMZM2G044569_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044569_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g29590.1 (Oryza sativa), 5'ss of exon 6
CATCCTTGGCATCGCCTATGGCTTCCTCGCTGCAACCATGGCGGTCCAGAGGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaacttccttctgtagatcagtacttttatagtattaagga-caagcaatatgtatattcacttgaaccattcaaattataagcgttgaagcacgtcaatcatgtgaagatcttaattattgcacggctaatttttggaggcagctgaacctttcactaatgatatgcag
|||||| || ||||| || || |||||||| ||||| ||||| ||||| || || |||||| |||| || |||||| |||||||||| ||  | ||||||||||| |||| |||     ||| |||| || || || |   || || | ||||| |||  |   || ||| |  ||||| | |||   |  | |     | || ||||    | ||                                                           
CATCCTCGGTATCGCATACGGTTTCCTCGCGGCAACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGgcaag-aactccctc----agaccagtgctcttctaatgacaatgatccagcaaaatgccttaacatttggat-attcagaatatct-ctctaagatgtg-cattcattcatatatgcag-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400233|gb|DN233040.1|DN233040
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACCCGGTGGAAGACCTTCACGGCAACTCCACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|67014989|gb|CO443738.1|CO443738
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|226431289|gb|GO477625.1|GO477625
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|86466823|gb|DY233193.1|DY233193
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|76913906|gb|DV165315.1|DV165315
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|4776418|gb|AI665421.1|AI665421
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|94474605|gb|EB703563.1|EB703563
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|37621915|gb|CF674968.1|CF674968
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|60352003|gb|DN218976.1|DN218976
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|78025929|gb|DV494316.1|DV494316
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|71764259|gb|DR962196.1|DR962196
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|67013125|gb|CO441874.1|CO441874
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|91877669|gb|EB407626.1|EB407626
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCCCGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|211031776|gb|FL480590.1|FL480590
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|76287271|gb|DV026839.1|DV026839
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|91875639|gb|EB405596.1|EB405596
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|60350312|gb|DN217285.1|DN217285
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|213169179|gb|FM192333.1|FM192333
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|74242906|gb|DT650820.1|DT650820
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|78085524|gb|DV513917.1|DV513917
EST:     GGATTTGGCAGAGGCACTATCACATCCTGCCCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|21395209|gb|BQ539639.1|BQ539639
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
EST: gi|76913907|gb|DV165316.1|DV165316
EST:     GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAG                         GAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT
genomic: GGATTTGGCAGAGGCACTATCACATCCTGACCAAAAGGGAGTTGACAAAGgcaagcaact ... tgatatgcagGAATACGTGGTGGAAGACCTTCACGGCAACTACACAGCGCCGAAGCTTGAT