1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATTATTGCCTCAATACCTGGATTTTTCTTTTGCTTGTGGTATGCGTCAAAGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgcatggtttaacattaataatttaatatgcattactaaagattatgggatgaagcctaaattcatttgatttgttttacacaccatttttagtttaccagaaccttgacagttcaattttgcag
species | Zea mays |
transcript | GRMZM2G044348_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAAATGCTGTCATTGGGATCATTTAAAEST: gi|148948442|gb|EC893960.2|EC893960
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAA
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGEST: gi|148948218|gb|EC893734.2|EC893734
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGG
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTEST: gi|91875915|gb|EB405872.1|EB405872
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGT
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGGAT-GAGATGCTGTCEST: gi|149097124|gb|EE182936.2|EE182936
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGG-ATTGAGATGCTGTC
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCEST: gi|149001048|gb|EE038297.2|EE038297
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCC
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATEST: gi|91875914|gb|EB405871.1|EB405871
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCAT
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|149100817|gb|EE186911.2|EE186911
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: AGAAGCATTGGCTTGCNAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTGEST: gi|78088713|gb|DV517106.1|DV517106
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTEST: gi|148943973|gb|EC889054.2|EC889054
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATT
EST: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAG GGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
genomic: AGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgc ... aattttgcagGGGATTGAGATGCTGTCATTGGGATCATTTAAAACTGGAGCCATTCTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTATTGCCTCAATACCTGGATTTTTCTTTTGCTTGTGGTATGCGTCAAAGAAGCATTGGCTTGCAAACAATGTCCTGGGATTGGCTTTCTGTATTCAGgtttgtttgcatggtttaacattaataatttaatatgcattactaaagattatgggatgaagcctaaattcatttgatttgttttacacaccatttttagtttaccagaaccttgacagttcaattttgcag
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