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GTATTGAGCCTTACGCAACTCTATATCATTGGGATCTTCCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcactgcaggcatctttagtgtgcagtatgattaccaaagttttcttgacgcttaaacggatgattacatatgagattcttttcgagacaattttttatccagaagtggttgcaacttgattttctgtagtttatatgagtttctcaccataaaacatatcccag
species | Zea mays |
transcript | GRMZM2G044092_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTTGCAA-TTTTGGAGACAEST: gi|148983451|gb|EE029465.2|EE029465
genomic: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTT-GCAAATTTTGGAGACA
EST: CAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGANCA-GATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAEST: gi|148945621|gb|EC890879.2|EC890879
genomic: CAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGA-CAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACA
EST: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAGEST: gi|149042713|gb|EE047228.2|EE047228
genomic: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAG
EST: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACA-GATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAA-TTTTGGAGACAGEST: gi|71312821|gb|DR792939.1|DR792939
genomic: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAG
EST: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAGEST: gi|71772492|gb|DR970424.1|DR970424
genomic: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAG
EST: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGT GGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAG
genomic: CCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcact ... catatcccagGGAGTACTTTGCATTGTATGCAGAAGCTTGCTTTGCAAATTTTGGAGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGAGCCTTACGCAACTCTATATCATTGGGATCTTCCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcactgcaggcatctttagtgtgcagtatgattaccaaagttttcttgacgcttaaacggatgattacatatgagattcttttcgagacaattttttatccagaagtggttgcaacttgattttctgtagtttatatgagtttctcaccataaaacatatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA