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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCAGTCCCAAGCAGGCAGTCAACCCTGGGAAAGAGGAGAAGACGGAATCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgttgttgtggaggattttaaaaatacctaccaaatggaatgggcacaccacaccacaggctagtacagtatttctttttgggggaaaggaat...

Basic information

species Zea mays
transcript GRMZM2G044004_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298151|gb|DR785052.1|DR785052
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|211185322|gb|FL304176.1|FL304176
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|71440982|gb|DR822032.1|DR822032
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|50328106|gb|CO523232.1|CO523232
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAG
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAG
EST: gi|211185318|gb|FL304172.1|FL304172
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|211185320|gb|FL304174.1|FL304174
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|91048835|gb|EB159253.1|EB159253
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|211185319|gb|FL304173.1|FL304173
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
EST: gi|211185321|gb|FL304175.1|FL304175
EST:     TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAG                         TGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA
genomic: TCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgt ... tggatgacagTGGCGTGGTGGAGCACATCTTGCCTGACAGCCCCTTTGCGTCCCCCAGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGCAGTCCCAAGCAGGCAGTCAACCCTGGGAAAGAGGAGAAGACGGAATCTGGTCCTGTCACAGCCACGCCCATTGTTGCCTGTGGATTCCAAGAAAGgttagattgttgttgtggaggattttaaaaatacctaccaaatggaatgggcacaccacaccacaggctagtacagtatttctttttgggggaaaggaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA