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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGTTCAATAAGGCTGCACAGTCCTTAACAGATGCGATTATTCCTTCTGCTCAGAAAAGACTGGCTTTAAATCGTTTGATTAAAgtaagaaaaacaatgaaacattatattatatatcctgtcattagttctatttattaattttaataatgtccctttccccatccctttaaag

Basic information

species Zea mays
transcript GRMZM2G043509_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 6
GTTGAGTTCAATAAGGCTGCACAGTCCTTAACAGATGCGATTATTCCTTCTGCTCAGAAAAGACTGGCTTTAAATCGTTTGATTAAAgtaagaaaaac-aatgaaacattatattatatatcctgtcattagttctatttattaattttaataatgtccctttccccatccctttaaag
||||||||||||||||||||||| || || ||||| || |||||||| ||| | || | |||| | ||||| | ||| |||||||| ||| || |||  |||  || |  |||||  ||      | |||  ||| |||  | | |||| || ||  |   |||    |  |||| |||
GTTGAGTTCAATAAGGCTGCACAATCATTGACAGACGCAATTATTCCCTCTACCCAAAGAAGAGTTGCTTTGAGTCGATTGATTAAGgtatgataaattaatagaagaggatattgcatgc----taatttattccattgctgacttttcattattgctggttctgt-tttctttgaag

upper sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 5
GTTGAGTTCAATAAGGCTGCACAGTCCTTAACAGATGCGATTATTCCTTCTGCTCAGAAAAGACTGGCTTTAAATCGTTTGATTAAAgtaagaaaaacaatgaaacattatattatatatcctgtcattagttctatttattaattttaataatgtccctttccccatccctttaaag
||||| || ||||||||||||||||| |||||||||||  | |||||  |  ||||||| | |   || || ||| |  || |||| ||    |   ||   ||| |||  ||  ||  |      || |      | |   | |  || | |      ||||   |     |||   
GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGgtgcttattgca-ccaaagattgcatgttactttaaaaaatgatgctcttattgaagtagtacttaccaagttttctttacattcttag--

upper sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 5
GTTGAGTTCAATAAGGCTGCACAGTCCTTAACAGATGCGATTATTCCTTCTGCTCAGAAAAGACTGGCTTTAAATCGTTTGATTAAAgtaagaaaaacaatgaaacattatattatatatcctgtcattagttctatttattaattttaataatgtccctttccccatccctttaaag
||||| || ||||||||||||||||| |||||||||||  | |||||  |  ||||||| | |   || || ||| | ||| |||| |||    |    |  ||  |||  ||  ||  |    | | |   |||  ||||| |  |   |  |  |   ||  |  | | ||   ||
GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGATTGGTTAAGgtagcttattgcaccaataattgcatgttac-tataataaatgactct-cttattgaagtagttcttaccaagttttctttacattcttag