1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATCGTGCTCCTGAGCTCATATTTGGTGCAACTGAATACACAACATCTATTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAAgtaagtgctttagttacccgctttctttttttttgcttgcatctctctacatcttttatgccattgtgatgccatttcagcagtgaagttatactaatttacttatatttgtttcttgcaatttattag
species | Zea mays |
transcript | GRMZM2G043350_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAA CCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGEST: gi|211363839|gb|FL067525.1|FL067525
genomic: TTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAAgtaagtgctt ... aatttattagCCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG
EST: TTGATATAT--TCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAA CCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGEST: gi|78092424|gb|DV520798.1|DV520798
genomic: TTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAAgtaagtgctt ... aatttattagCCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG
EST: TTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCCTAGTCAA CCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG
genomic: TTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAAgtaagtgctt ... aatttattagCCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCGTGCTCCTGAGCTCATATTTGGTGCAACTGAATACACAACATCTATTGATATATGGTCAGCTGGATGTGTTCTTGCTGAGCTTCTTCTTAGTCAAgtaagtgctttagttacccgctttctttttttttgcttgcatctctctacatcttttatgccattgtgatgccatttcagcagtgaagttatactaatttacttatatttgtttcttgcaatttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT