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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCTGCGATATTTGTCGGGGTGTATGAGCCAACTAAAAGAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttagacaaggcttattatttgagattgctatttgtgccatgtaattttcattttatagcaccagcacattttttattttacattaccagaatgttattttttgtattctctgtgaattctttgtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacag

Basic information

species Zea mays
transcript GRMZM2G042027_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g29860.3 (Oryza sativa), 5'ss of exon 4
---------GGCCTCTGCGATATTTGTCGGGGTGTATGAGCCAACTAAAAGAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttagacaaggcttattatttgagattgctatttg--tgc-catgtaattttcattttatagcaccagcacattttttattttacattaccagaatgttattttttgtattctctgtgaattctttgtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacag
         ||| |||||  ||||||| ||  | || || || || ||||||||| ||||||| ||  ||||||||||| ||||||| ||||||||||||||||||||        |||  || |       ||| |||  ||| | |  ||| || ||      | || | |    | ||||||||  || | |    |||| |                                                                                
TGCTTGTAGGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaacatgcatttaacatgtttttgcactagttgattgcacgtagaatgttgatcaggctgtac-atcgtgctgtttattttgtataatc----tgtttt--------------------------------------------------------------------------------

upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g29860.1 (Oryza sativa), 5'ss of exon 5
GGCCTCTGCGATATTTGTCGGGGTGTATGAGCCAACTAAAAGAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttagacaaggcttattatttgagattgctatttg--tgc-catgtaattttcattttatagcaccagcacattttttattttacattaccagaatgttattttttgtattctctgtgaattctttgtgcctacgacagcatatattcattaatactgatcatatagtgcaattgctacag
||| |||||  ||||||| ||  | || || || || ||||||||| ||||||| ||  ||||||||||| ||||||| ||||||||||||||||||||        |||  || |       ||| |||  ||| | |  ||| || ||      | || | |    | ||||||||  || | |    |||| |                                                                                
GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTTgtaagttaacatgcatttaacatgtttttgcactagttgattgcacgtagaatgttgatcaggctgtac-atcgtgctgtttattttgtataatc----tgtttt--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371111|gb|FL037583.1|FL037583
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|50325364|gb|CO520490.1|CO520490
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|71436673|gb|DR817723.1|DR817723
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|71302083|gb|DR787129.1|DR787129
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|76011416|gb|DT938586.1|DT938586
EST:     AAATCTGAGTGCAG-TGCCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTAC
genomic: AAATCTGAGTGCAGTTG-CCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTAC
EST: gi|91054196|gb|EB164614.1|EB164614
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|78083391|gb|DV511784.1|DV511784
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|60342707|gb|DN209680.1|DN209680
EST:     GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: GAAAATTACTGGAAACCCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
EST: gi|67018887|gb|CO447636.1|CO447636
EST:     CCTTCCTTAAAATCTGAGTGCAGTTGCCCATTTT                         ACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA
genomic: CCTTCCTGAAAATCTGAGTGCAGTTGCCCATTTTgtaagttaga ... attgctacagACTGCAGGGGCCATTGGAGGTATTGCTGCTTCCCTCGTCCGTGTCCCTACA