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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAGgtatttgtttttgtaaactttttttttctattgaaattgacataccagtcctaagtgcaattgagtgacttctttttttccccagagaagtatgataataactagacctgagctcagttttgtgtaacacattgcag

Basic information

species Zea mays
transcript GRMZM2G041701_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041701_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g33430.2 (Oryza sativa), 5'ss of exon 5
GGCCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAGgtatttgtttttgtaaactttttttttctattgaaattgacataccagtcctaagtgcaattgagtgacttctttttttccccagagaagtatgataataactagacctgagctcagttt--tgtgtaacacatt--gcag
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GGGCTTGGATGATTCAGGAGTGGAATTAGATAATGGTCTTTCAGCTTTGCAGgtatttggtcatgtacagttt------------aaattggcgtacta-tcttaagtgcaccagaatacctttattct-------gacaagaatgcctgtgcatatttctaagcacaaatccatatgcaaccctttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211090511|gb|FK961028.1|FK961028
EST:     CCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAG                         GCAGAAGTTGAAAATCTTAGTCTGCAGGAGCAAGCTCTAGATGAGCGTATA
genomic: CCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAGgtatttgttt ... cacattgcagGCAGAAGTTGAAAATCTTAGTCTGCAGGAGCAAGCTCTAGATGAGCGTATA
EST: gi|211090513|gb|FK961030.1|FK961030
EST:     CCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAG                         GCAGAAGTTGAAAATCTTAGTCTGCAGGAGCAAGCTCTAGATGAGCGTATA
genomic: CCCTGGATGATTCAAGTGTTCAATTAGATAATGGTATCTCTGCTTTGCAGgtatttgttt ... cacattgcagGCAGAAGTTGAAAATCTTAGTCTGCAGGAGCAAGCTCTAGATGAGCGTATA