1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTTAGCCAAACTGTGAGGGAGTTGGAAGAAGCTGTTCTTCAAGGTGGTGCAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAATgtaacaaactatccttagattggttacttcttttgccttcaaatccatgtcaatttttttacccttttcaacatgaacacttgattcatgcttatgtttatgattttattag
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAAT GAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCAEST: gi|211166804|gb|FK981058.1|FK981058
genomic: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAATgtaacaaact ... attttattagGAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCA
EST: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAAT GAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCAEST: gi|13381901|gb|BG458576.1|BG458576
genomic: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAATgtaacaaact ... attttattagGAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCA
EST: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAAT GAAGAAAAGAGAACACTTGACCGTGAACEST: gi|28910649|gb|CB331544.1|CB331544
genomic: CAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAATgtaacaaact ... attttattagGAAGAAAAGAGAACACTTGACCGTGAAC
EST: GATTTCAAGAAATAAAT GAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCA
genomic: GATTTCAAGAAATAAATgtaacaaact ... attttattagGAAGAAAAGAGAACACTTGACCGTGAACTTGCACGTGCAAAAGTTACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTAGCCAAACTGTGAGGGAGTTGGAAGAAGCTGTTCTTCAAGGTGGTGCAACGGCTAATGTTGTTCGAGATTACCAGCGCAGATTTCAAGAAATAAATgtaacaaactatccttagattggttacttcttttgccttcaaatccatgtcaatttttttacccttttcaacatgaacacttgattcatgcttatgtttatgattttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA