Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGTGATTACATCCACGTTGTCGACCTGGCTGACGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttattaccggttgtttattctgaacttcatggacaactcagccgctgttgtatactcaagcaatcagctggagctggctgatgatgctgatgctcatctatcggttgggtgtgatgcgtgtag

Basic information

species Zea mays
transcript GRMZM2G038598_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440043|gb|DR821093.1|DR821093
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|148951201|gb|EC896889.2|EC896889
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|71440044|gb|DR821094.1|DR821094
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|74237590|gb|DT645504.1|DT645504
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|31250360|gb|CD219384.1|CD219384
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|74240923|gb|DT648837.1|DT648837
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|78085825|gb|DV514218.1|DV514218
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|74237589|gb|DT645503.1|DT645503
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|78085824|gb|DV514217.1|DV514217
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|149087171|gb|EE176707.2|EE176707
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|18660097|gb|BM500685.1|BM500685
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCCGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|71429156|gb|DR810206.1|DR810206
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|69351133|gb|DR452031.1|DR452031
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|58029768|gb|CX725195.1|CX725195
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCCACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|116828756|gb|EC860854.1|EC860854
EST:     CGGCCACATAG-AGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|50335983|gb|CO531109.1|CO531109
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|18163517|gb|BM333356.1|BM333356
EST:     GCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: GCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|78121122|gb|DV539506.1|DV539506
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
EST: gi|50324852|gb|CO519978.1|CO519978
EST:     CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAG                         GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA
genomic: CGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttatt ... atgcgtgtagGCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCGTGATTACATCCACGTTGTCGACCTGGCTGACGGCCACATAGCAGCCCTGAGGAAGCTCTACGAAGACTCCGACAAAATAGgttggttattaccggttgtttattctgaacttcatggacaactcagccgctgttgtatactcaagcaatcagctggagctggctgatgatgctgatgctcatctatcggttgggtgtgatgcgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA