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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTCTCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctgcattgccttgttcatgtgaacattgatgtatttttagaagggttatgctgtatgtgattcattctttgttccattccacactcataactg...

Basic information

species Zea mays
transcript GRMZM2G038588_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960674|gb|EE011305.2|EE011305
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTTTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|71763129|gb|DR961066.1|DR961066
EST:     AATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: AATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|86471476|gb|DY237846.1|DY237846
EST:     ACGCAATTGAAACCTTCAAGGCCAAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: ACGCAATTGAAACCTTCAAGGCC-AATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|78075700|gb|DV504134.1|DV504134
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|78081105|gb|DV509517.1|DV509517
EST:     ACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: ACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|71323423|gb|DR798362.1|DR798362
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|110518920|gb|EE023507.1|EE023507
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|31405753|gb|CD484485.1|CD484485
EST:     CCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: CCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|50338323|gb|CO533449.1|CO533449
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|86471665|gb|DY238035.1|DY238035
EST:     AAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: AAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|149010086|gb|EE041893.2|EE041893
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|116827681|gb|EC871609.1|EC871609
EST:     TACTGGTACTGGGACAG                         GAGAAAC-CTGGAAGATGTTGAAAGATGC-GTTC-AAGC-AGT-CAACATT
genomic: TACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|149073620|gb|EE161922.2|EE161922
EST:     GCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGGCAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: GCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|149034778|gb|EE155078.2|EE155078
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|93014406|gb|EB639926.1|EB639926
EST:     TCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|211013387|gb|FL466952.1|FL466952
EST:     CAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: CAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|60401015|gb|DN233822.1|DN233822
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|71324526|gb|DR798964.1|DR798964
EST:     TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: TCAACGCAATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
EST: gi|78122373|gb|DV540757.1|DV540757
EST:     AATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAG                         GAGAAACTTTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT
genomic: AATTGAAACCTTCAAGGCCAATGTAGTACTGGTACTGGGACAGgcaagttctg ... tggcttgcagGAGAAACTCTGGAAGATGTTGAAAGATGCAGTTCAAAGCAAGTCCAACATT