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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCAGGAAGGAATGGTCTGGATTTGGCCTGGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTACACGCAGAGgtaaaaggaaatcctgctatgatgcagtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacag

Basic information

species Zea mays
transcript GRMZM2G038487_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGAATGGTCTGGATTTGGCCTGGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTACACGCAGAGgtaaaaggaaatcctgctatgatgcagtggcaa----------aagtgtattgtg-----------ttgtattgtattgtattgtaacggtgt-gttct-gatcatccaacag
|||||| ||||||||||| ||||| ||||||||  |||||||||| ||| | || ||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||| ||  ||| |||||   | |          || |||  ||||           || || || | || |  |||| ||  | ||||| ||||||| |||||
TGAGCAAGAAGGAATGGTTTGGATATGGCCTGGCAATGACCCACCGAAGTCGACTATCCCTTCTCTGCTGCCTCCTTCAGGATTTACAATTCACGCAGAGgtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgtcctgtgcatttcaagatttttactggactgaaaagtaatggaattgttcttgatcatc-aacag

upper sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 6
TGAGCAGGAAGGAATGGTCTGGATTTGGCCTGGGGATGACCCACCAAAGGCTACAATCCCTTCTCTTCTGCCTCCTTCAGGATTTACAGTACACGCAGAGgtaaaaggaaatcctgctatgatgcag----------tggcaaaagtgtattgtgttgt-------------attgtattgtattgtaacgg--tgtgttctgatcatccaacag
|||||| ||||| ||||| ||||| |||||||| |||| | ||||  || | || ||||||||||| | ||| ||||||||||||||| | || |||||||||||| |||||| ||  ||  |||||          |||  |||||||  |||||| |             | || | ||||  |||| ||  | | |  | |||||| |||||
TGAGCAAGAAGGCATGGTTTGGATCTGGCCTGGTGATGGCACACCGGAGTCGACTATCCCTTCTCTGCAGCCCCCTTCAGGATTTACAATTCATGCAGAGgtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatc-aacag