Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatcttccattctttttaatggtatcttttgtcactcatgtatcagcttctagactaaacgagtcaacaatctcaaacag

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 6
GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatct---tccattctttttaatggtat---cttttgtcactcat-gtatcagcttctagactaaacgagtcaacaatctcaaacag
|| |||||||||||||||||||||||||||||||||||||||||  | |||||| |||||| | ||   |  || |  || | || | |   ||  |||  |||||  | |  | || |  | |||| |    |||| ||   |||||
GTCATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCATTAGGGCAGACgtaagcacctagatttatcccattcattgctgttgcctcgtgttcctcatcatttgtgtttatgtattaaaagtaataaca-tcattaacag

upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 6
GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaag-tatcttccattctttttaatggtatcttttgtcactcatgtatcagcttctagactaaacgagtca---acaatctcaaacag------------------
|| ||||| |||||||| ||||| ||||||||||| ||||||||  | || ||   ||||| | | | || | | ||||  | ||||   ||  |  | |  || | ||   |    |||||   ||    | || | | |  |                   
GTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTGTTGGTCAACAgtaagatttgtaccctcccttttgttagtataggttcactttta-atagctgcaatttatttaaactcttcctatataagccccattaacattttagttctggacag

upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 6
GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatcttccattctttttaatggtatcttttgtcactcatgtatcagcttctagactaaacgagtcaacaatct--caaacag
|| ||||| |||||||| || |||||||||||||| ||||||||  |||  ||  |||||||| |||  ||  || |  ||    | | ||  ||  ||||     ||   ||  |||||    | |    |||       ||
GTCATGGACATGCTTGGGCCTAGCCTTTGGGATGTTTGGAATTCTTTGGCTCAATCgtaagta-cttttatcattctatat----tttcttaccaaccatgctcatgcagatatgctaaatttattatttttctatttggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928688|gb|CF033500.1|CF033500
EST:     GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC                         GATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
genomic: GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatct ... tctcaaacagGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
EST: gi|32929679|gb|CF034491.1|CF034491
EST:     GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC                         GATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
genomic: GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatct ... tctcaaacagGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
EST: gi|211490682|gb|FL280129.1|FL280129
EST:     GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC                         GATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
genomic: GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatct ... tctcaaacagGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
EST: gi|211490680|gb|FL280127.1|FL280127
EST:     GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC                         GATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT
genomic: GATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGCgtaagtatct ... tctcaaacagGATGACTCCAAATATGGCTGCTTGCATTGCTGTAGAGAGCATATCAATTCT