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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCTCTTTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcataattctctgtcgatattaggtatttcccttgtcaaagctgttcatggttctaataattattttggcgcag

Basic information

species Zea mays
transcript GRMZM2G037200_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g45480.4 (Oryza sativa), 5'ss of exon 4
--------------------------------ATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCTCTTTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcataattctctgtcgatattaggtattt--cccttgtcaaagctgttcatggttctaataattattttggcgcag-----------------------------------------------------------------------
                                 |||||||||||| ||  | || ||||||||||| |||||||| || || ||||||||||||||||||||||||| |  ||     | | || ||||| | ||||||   |  | | | |  | |||   ||| |  ||||| |||  ||  ||||   |  |     || ||   |  |                                                                         
GCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTTCCTTGGATCAAACAATAAAAgttagtctctgtccttgactttatgttgtttaataattttgcagatatgtcttcacattccatatcttacccttttcattgcatttcacactcgttcattttgttcctgttcttctaacatcatatctgtaatcacgttttatcctttcagtgcattcatacttctacgctgtgtttctcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211273334|gb|FL390033.1|FL390033
EST:     TTGGATCAAACAATAAAAGTTATTCGCCATCTACATCATCATTTTGTTGA                         GTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGTAACATATACACACAAA
genomic: TTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcat ... tttggcgcagGTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGTAACATATACACACAAA
EST: gi|211403681|gb|FL424159.1|FL424159
EST:     TTGGATCAAACAATAAAAGTTATTCGCCATCTACATCATCATTTTGTTGA                         GTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGTAACATATACACACAAA
genomic: TTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcat ... tttggcgcagGTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGTAACATATACACACAAA
EST: gi|211527293|gb|FL400210.1|FL400210
EST:     TTGGATCAAACAATAAAAGTTATTCGCCATCTACATCATCATTTTGTTGA                         GTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGYAACATATACACACAAA
genomic: TTGGATCAAACAATAAAAGTTAGTCGCCATCTACATCATCATTTTGTTGAgtaatttcat ... tttggcgcagGTTTGGGCCGCTACAGAGAGTGGAAACTTAGAAGTAACATATACACACAAA