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GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttctattctatcggtaatcccttgccctacatgttagccatggtagttattggccttggccaatgtgtaacagaagagcaccaccatgtacttg...
species | Zea mays |
transcript | GRMZM2G036861_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCACATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|71442820|gb|DR823870.1|DR823870
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|148995329|gb|EE034551.2|EE034551
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|149036977|gb|EE155215.2|EE155215
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATEST: gi|149078720|gb|EE167520.2|EE167520
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGAT
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|71768469|gb|DR966406.1|DR966406
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|148947516|gb|EC892976.2|EC892976
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATGEST: gi|78109644|gb|DV528060.1|DV528060
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
EST: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG ATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... tttttttcagATAGAGAGCAACATCGTTAGATGTCCTGATCCAGAGTACGCAGAGAAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGTGGGAGGTCGTCGGGCAGAGAAACCGTTGGAAGGGTGGCTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttctattctatcggtaatcccttgccctacatgttagccatggtagttattggccttggccaatgtgtaacagaagagcaccaccatgtacttg
- - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaag