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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcatgtaaaagtggacaacttacattcgattccaacctttctccttgaagtaattatttcattttccagtgtttacatttctatttggattaacttttattgacagttctgtatgttccactagatttaagtagtgaaccacttctcttcttgcag

Basic information

species Zea mays
transcript GRMZM2G034083_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 6
GTGGGGCAATATTGTGTTTCCCCTACCATTTGGAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcatgtaaaagtggacaacttacattcgattccaacctttctccttgaagtaattatttcattttccagtgtttacatttctatttggattaacttttattgacagttctgtatgttccac-tagatttaagtagtgaaccacttctcttcttgcag
|||||| || |||  ||| || || || || |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||   |||| |             ||   | |  |   ||   | || | ||      ||| | ||| |  |     ||| ||||  ||    ||| | ||| | || |   |||| |||    |  | || |   | | |||      | |  | || |||
GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcatat---------ttctttctttcccctctgaagtctgctgcctg------ttagtacatatcac-----ttaaatttggatacaaattgaatttcactgcc---tctgcatgcaaaatattgaatcttgaattgaggttgatgtaatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32848515|gb|CD988196.1|CD988196
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTA
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTA
EST: gi|67023264|gb|CO452013.1|CO452013
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|40303556|gb|CK347943.1|CK347943
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|31357444|gb|CD441801.1|CD441801
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|67013475|gb|CO442224.1|CO442224
EST:     GAAGAGTTCTCACTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|211020101|gb|FL063974.1|FL063974
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|18964714|gb|BM661164.1|BM661164
EST:     GAAGAGTTCTCAGTCCCTCCG-AAGTTTTATCCATGAACTGGATGAGATG                         AC-AGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|60353107|gb|DN220080.1|DN220080
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGCGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|18964715|gb|BM661165.1|BM661165
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|22490798|gb|BU050721.1|BU050721
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|67025367|gb|CO454116.1|CO454116
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|7238111|gb|AW573333.1|AW573333
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|44901489|gb|CK828034.1|CK828034
EST:     GAAGAGTTCTCAGTCCCTCGGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGT
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|149008522|gb|EE040695.2|EE040695
EST:     CCATGAACGGGATGGGAAG                         ACAAGTGCTTTTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: CCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|19058295|gb|BM736962.1|BM736962
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         CCAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|78103680|gb|DV522108.1|DV522108
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|31353311|gb|CD437668.1|CD437668
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|13150060|gb|BG320382.1|BG320382
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|37400570|gb|CF637640.1|CF637640
EST:     CCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: CCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|31354936|gb|CD439293.1|CD439293
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|60339101|gb|DN206074.1|DN206074
EST:     G-AGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|19057819|gb|BM736486.1|BM736486
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|84980549|gb|DW530898.1|DW530898
EST:     GAACTGGATGAGAAG                         AC-AGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|87151765|gb|DY396554.1|DY396554
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|67042517|gb|CO468772.1|CO468772
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|32859101|gb|CD998782.1|CD998782
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|67022701|gb|CO451450.1|CO451450
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|149000524|gb|EE037707.2|EE037707
EST:     AAGAGTTTTCAGTCCCTCCGAAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTTTCTGAAATTCACGGTACTGAACCAAAAAGGACGCATCTGG
genomic: AAGAGTTCTCAGTCCCTCCG-AAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|60350340|gb|DN217313.1|DN217313
EST:     AAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGCGCTTTTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: AAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|33104123|gb|CF064083.1|CF064083
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGT
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGT
EST: gi|166544546|gb|EG308464.1|EG308464
EST:     CTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: CTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|37401585|gb|CF638160.1|CF638160
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCGTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG
EST: gi|67016541|gb|CO445290.1|CO445290
EST:     GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAG                         ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGA-GCATCTGG
genomic: GAAGAGTTCTCAGTCCCTCCGAAAGTTTTATCCATGAACTGGATGAGAAGgtatgttcat ... cttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGG