1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATTATTTGTCTTTGTGGAGCGAGACAATGATGAAGTTGGTGAACCAGTTGCCAACTACTTTGGTCTTACTGGACAAGAGACCACAgtaataccttttttcttacattattaacctggtttcatgtctttatattctcaccttgtaaattccaattgcgttctgctgcag
species | Zea mays |
transcript | GRMZM2G033829_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACA GTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGCEST: gi|17970051|gb|BM276819.1|BM276819
genomic: TTGGTGAACCAGTTGCCAACTACTTTGGTCTTACTGGACAAGAGACCACAgtaatacctt ... tctgctgcagGTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGC
EST: CAAGAGACCACA GTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGCEST: gi|18385207|gb|BM418406.1|BM418406
genomic: CAAGAGACCACAgtaatacctt ... tctgctgcagGTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGC
EST: TTGGTGAACCAGTTGCCAACTACTTTGGTATTACTGGACAAGAGACCACA GTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGC
genomic: TTGGTGAACCAGTTGCCAACTACTTTGGTCTTACTGGACAAGAGACCACAgtaatacctt ... tctgctgcagGTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTCCTTGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTATTTGTCTTTGTGGAGCGAGACAATGATGAAGTTGGTGAACCAGTTGCCAACTACTTTGGTCTTACTGGACAAGAGACCACAgtaataccttttttcttacattattaacctggtttcatgtctttatattctcaccttgtaaattccaattgcgttctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA