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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag

Basic information

species Zea mays
transcript GRMZM2G032505_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaactt---atgctcaaattgctgaagtttgt-cagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag
||||||||| ||||| |||||| ||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| || | ||| |   |||   ||   ||| | |||| | ||     || | |  |||  |||    |||    | |  |  | |||   ||| ||||||||
TGCTGACATTCTTGATCCTGCTTTGATGCGATCTGGTCGTTTGGACCGAAAGATTGAGTTTCCTCATCCATCTGAAGAAGCAAGAGCTAGAATCTTGCAAgtaggtttccagaacctgtgatgtctaatcagctaatgtttattcatccatttgcttttgtaatccacaagtcatgctttaactaatatgt---ggttctctgtag

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtc-ggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag
||||||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||||||||||| |||||| | ||||||||||||||  ||||  | || ||  ||| ||  ||| || |       |||||||  |||         ||||      ||  | |||       || | || ||    |||  |    |    
TGCTGACATTCTTGATCCTGCCCTTATGCGTTCTGGTCGATTGGATCGAAAAATTGAGTTCCCACACCCAACTGAAGAAGCAAGAGCCCGAATTCTACAGgtttggtatcttcaaattttat-----ttgctgacattt---------tttctctgacagaacttttg------cttatgtttttcacattaatatcatag--

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag
||| || || ||||| ||||| |||||||| ||||| || ||||| || || |||||||| || ||||||   ||||||||||||||| ||||  | || ||  ||           |  ||  |  ||||||      |   |   |     || |   |    || |   |||    | || |                 
TGCAGATATTCTTGATCCTGCCCTGATGCGTTCTGGTCGTTTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCTCGAATTCTACAGgtttgtt---gtcttccaaactttacctgctgacac--attgttcaatcaaaacattta-ctgactaccctcactttgatattttag---------------

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaact-aacgtgttctgtattggtcctctgtag
||| || || || ||||| || || ||||| ||||| || || ||| |||||||||||||||| |||||| |||||||||| ||||| ||||||||||| ||  |||||  | | || | |  | ||  |    | |  | |||      |     ||   ||  || | ||||| || |  | | |                
TGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAGCGAGAGCAAGAATCTTGCAGgtttgtctctcccattttt-caaacatgacccttggtgataagtaaaaggctctcataacacaactaacccaactgaatgaatccag----------------

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 9
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaacta-acgtgttctgtattggtcctctgtag----
 ||||| ||||| || || ||||| ||||| ||||| || || |||||||| |||||||||||||| || || ||||| |||||||| ||||| ||||| ||  | ||  ||      |  ||            ||||||||    |||   || |     ||||| |||   |  |  | || |    || |   |||||     
GGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGgtgagactgtactggcagtagtcc-----------tttgtcagaaattttttgcattta--tatttaccactcttgtaaatctttttggatgttttcctgtatgcag

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag
 ||||| || || |||||||| || ||||||||||| || ||||| || || |||||||| || || ||  | ||||||||||||||| |||||||||| ||  ||||  |     |||  ||   | | | |  ||   || ||      ||  | ||  |  ||||    |||         |||||| ||         
AGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttcaatgaatattttcttctagatca--ttacacattgatcactctttgcagagctcttattg--actctttcacattgtatttgtag-------

upper sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 5'ss of exon 8
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctca--aattgctgaagtttgt-cagtg--gctttcctcagtaggccatttatcacaactaacgtgtt-ctgtattggtcctctgtag----------------------------------------------------------------------
 || || ||  | ||||||||| ||||||| |||||||| |||||  | ||||||||||| ||||| ||| | || || ||| ||||| | || ||||| ||  |  | ||||| |   |||    |     |||||||||   | |   |    ||| |     |||| | |  || |||  || || |||| |    | ||| ||                                                                       
AGCAGATATTTTGGACCCTGCTTTGATGCGTTCTGGACGTTTGGATAGGAAGATTGAGTTTCCTCATCCAACGGAGGAGGCACGAGCTCGTATTTTGCAGgttcggataaacaa-tagcgcttggtagactttgaagtttgcataatcctgtacccctaacctaaccatgtttt-cacctattgttttactgtttgatccttctataattataccacctatacagatttttatgagcaggatatcttatcaatcactgtaatgaactttcacctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40335877|gb|CK369947.1|CK369947
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|21809843|gb|BQ668161.1|BQ668161
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|15589970|gb|BI674586.1|BI674586
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149101526|gb|EE187649.2|EE187649
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|32932292|gb|CF037104.1|CF037104
EST:     GATTGAGGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: GATTGAG-TTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|6828072|gb|AW331715.1|AW331715
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60349052|gb|DN216025.1|DN216025
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|40303137|gb|CK347524.1|CK347524
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|29130513|gb|CB381217.1|CB381217
EST:     AGATTGAGTTCCCTCCCCCCTCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCCTTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211211385|gb|FL017117.1|FL017117
EST:     AGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|67025949|gb|CO454698.1|CO454698
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|91878259|gb|EB408216.1|EB408216
EST:     CGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: CGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|37387668|gb|CF631032.1|CF631032
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60343601|gb|DN210574.1|DN210574
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60399057|gb|DN231873.1|DN231873
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGACGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|76288480|gb|DV028048.1|DV028048
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|6227044|gb|AW155748.1|AW155748
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149077126|gb|EE165786.2|EE165786
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60348868|gb|DN215841.1|DN215841
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|32931353|gb|CF036165.1|CF036165
EST:     GATTGAGGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: GATTGAG-TTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60341549|gb|DN208522.1|DN208522
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|22935344|gb|BU571619.1|BU571619
EST:     AGATTGAGTTCCCTCCCCCCTCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCCTTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|22473220|gb|BU037700.1|BU037700
EST:     AGATTGAGTTCCCTCCCCCCTCCGAAGAAGCCAGAGCTAGAATCTTGCAA                         ATCCCTTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149027737|gb|EE154581.2|EE154581
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211112761|gb|FL481602.1|FL481602
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60398226|gb|DN231042.1|DN231042
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|15590428|gb|BI675044.1|BI675044
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149096588|gb|EE182347.2|EE182347
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|148979720|gb|EE026793.2|EE026793
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211292080|gb|FL259237.1|FL259237
EST:     AGATTGAGTTCCCTCWCCCATCCGWAGAWGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|23512613|gb|BU672752.1|BU672752
EST:     AGATTGAGTTCCCTCCCCCCTCCGAAGAAGCCAGAGCTAGAATCTTGCAA                         ATCCCTTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211370090|gb|FL332304.1|FL332304
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGA
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGA
EST: gi|60397037|gb|DN229856.1|DN229856
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60340215|gb|DN207188.1|DN207188
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|40335237|gb|CK369307.1|CK369307
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60357103|gb|DN224076.1|DN224076
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|45847085|gb|CN071028.1|CN071028
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|74241693|gb|DT649607.1|DT649607
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211086755|gb|FL006907.1|FL006907
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|6918604|gb|AW400134.1|AW400134
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211467054|gb|FL315144.1|FL315144
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|5706266|gb|AI942042.1|AI942042
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|30306997|gb|CD001670.1|CD001670
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|67010865|gb|CO439614.1|CO439614
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|5688622|gb|AI941637.1|AI941637
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|21626144|gb|BQ621065.1|BQ621065
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60353805|gb|DN220778.1|DN220778
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|76288310|gb|DV027878.1|DV027878
EST:     AGATTGAGTTCCCTCCCCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAAGGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|31558076|gb|CD527288.1|CD527288
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|22473394|gb|BU037874.1|BU037874
EST:     AGATTGAGTTCCCTCCCCCCTCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCCTTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|60397276|gb|DN230092.1|DN230092
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|37382500|gb|CF628198.1|CF628198
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149085415|gb|EE174921.2|EE174921
EST:     AGATTGAGTTCCCTCCCCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|211287069|gb|FL337511.1|FL337511
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
EST: gi|149100562|gb|EE186647.2|EE186647
EST:     AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAA                         ATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG
genomic: AGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 348

TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 321

TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 308

TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctca ... tcctctgtagATCCATTCAAGGAAAATGAATGTAAATCCTGATGTCAACTTTGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGACATCCTTGACCCTGCTCTGATGCGATCTGGACGGTTGGACCGAAAGATTGAGTTCCCTCACCCATCCGAAGAAGCAAGAGCTAGAATCTTGCAAgtcggtctcaacaacttatgctcaaattgctgaagtttgtcagtggctttcctcagtaggccatttatcacaactaacgtgttctgtattggtcctctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT