Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGGATTATCTCCATAGTGATAACAACAGTCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAATATCCTCATTTCAAAATGCTTTGAACCAAAGgtaatacttctctgtcagatagcacaaaatacatcagttagtgtgcagtattgaaagtaagggagctcaaactttcaatatgtgtgatgttgcag

Basic information

species Zea mays
transcript GRMZM2G032337_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032337_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g08950.1 (Oryza sativa), 5'ss of exon 7
TGCTCTGGATTATCTCCATAGTGATAACAACAGTCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAATATCCTCATTTCAAAATGCTTTGAACCAAAGgtaatacttctctgtcagatagcacaaaata-catcagttagtgtgcagtattgaaagtaagggagctcaaactttcaatatgtgtgatgttgcag
||| || |||||||||||| ||  |  ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |    ||||| |||||||||| | ||  |  |   | | ||  ||| | | ||||||  ||||| ||||  ||| |||| ||||| | | ||||||   || |  |  |||||
TGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGgtaacatttgcccattcaacatcatgaaaaatcttcagttcctgtgctgtatc-aaattaagtgagcttacaatttcaac--gtcttgttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76909167|gb|DV163255.1|DV163255
EST:     GGGATGTCAAGTCATCAAATATCCTCATTTCAAAATGCTTTGAACCAAAG                         TTATCGGACTTTGGTCTCGCAGTCTGGGCTGCTGATGTGACATCTCA
genomic: GGGATGTCAAGTCATCAAATATCCTCATTTCAAAATGCTTTGAACCAAAGgtaatacttc ... gatgttgcagTTATCGGACTTTGGTCTCGCAGTCTGGGCTGCTGATGTGACATCTCA