1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCAGCCACAAGGTGGCCAAGATATTTTGTCCCTTATGGGCCAGATGATGAAGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattttttttttcagctaactttttttagttttataggcagtatcaaattttatataatcatgtaagaatcttcacctgattttaaattttacatggtgaaag
species | Zea mays |
transcript | GRMZM2G032267_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTEST: gi|32933015|gb|CF037827.1|CF037827
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
EST: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTAEST: gi|32933753|gb|CF038565.1|CF038565
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTA
EST: AGCCACGGAAGACTGAAATCACCGNNNNNNNNCGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTEST: gi|74241474|gb|DT649388.1|DT649388
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGT
EST: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTEST: gi|87157723|gb|DY402512.1|DY402512
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
EST: GAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTEST: gi|26559755|gb|CA831990.1|CA831990
genomic: GAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
EST: CCAAGAAATCAATAAG G-GGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGNG-GTEST: gi|60356915|gb|DN223888.1|DN223888
genomic: CCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTG-GTGT
EST: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTEST: gi|78103432|gb|DV521860.1|DV521860
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
EST: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAG GTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
genomic: AGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattt ... atggtgaaagGTGGTAAACAGATATATCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCCACAAGGTGGCCAAGATATTTTGTCCCTTATGGGCCAGATGATGAAGCCACGGAAGACTGAAATCACCGAAAAGCTACGCCAAGAAATCAATAAGgttttgattttttttttcagctaactttttttagttttataggcagtatcaaattttatataatcatgtaagaatcttcacctgattttaaattttacatggtgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA