Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag

Basic information

species Zea mays
transcript GRMZM2G030784_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag
| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || ||||||||||| ||        | |  |   |  || | | | ||   |  |  | |  ||  |      |  | |  ||| | |  |||| |      ||| | |  ||  | || |||   ||||  ||   || |||||||  |  |||
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttctt-------atattgataagcacacaaagtgttcattcatgaacttctgcac------gttccataattgttacctatgct------ctagataaaata-tcttgtttaaacaaccatctggtttgtattattgtatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71325325|gb|DR799341.1|DR799341
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|13558792|gb|BG550147.1|BG550147
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71433476|gb|DR814526.1|DR814526
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|21331670|gb|BQ487051.1|BQ487051
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAAGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAACGTCAGCCCTGAG
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAG
EST: gi|213178228|gb|FM191284.1|FM191284
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTNNNNNN
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18162386|gb|BM332225.1|BM332225
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67010285|gb|CO439034.1|CO439034
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|76294301|gb|DV033869.1|DV033869
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|17931550|gb|BM268510.1|BM268510
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|19351223|gb|BM895755.1|BM895755
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|32935763|gb|CF040575.1|CF040575
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211324554|gb|FL104645.1|FL104645
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAA
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAA
EST: gi|67021074|gb|CO449823.1|CO449823
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGNAGG-ATTGGCTAAAGACCAATGCCAGCCCCTGAG-
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTG-AGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGG
EST: gi|61236882|gb|DN586594.1|DN586594
EST:     TTGGGCTATTGGAACTGGTAAAGTTGNNNNNNNNAGCTCAGGCTCAGGAA                         GTGCACGCCCTCCCTGA
genomic: TTGGGCTATTGGAACTGGTAAAGTTGCCACCCC-AGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCC-TCCCTGA
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|60338268|gb|DN205241.1|DN205241
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|93013557|gb|EB639077.1|EB639077
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|74235418|gb|DT643332.1|DT643332
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGANGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|14242641|gb|BG840345.2|BG840345
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|40337088|gb|CK371158.1|CK371158
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31353766|gb|CD438123.1|CD438123
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|28576056|gb|CB281948.1|CB281948
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGNAG-T
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTG-AGGT
EST: gi|14243110|gb|BG840832.2|BG840832
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18172029|gb|BM347417.1|BM347417
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18169056|gb|BM338896.1|BM338896
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|17931629|gb|BM268589.1|BM268589
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCATGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|113703957|gb|EE681461.1|EE681461
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTTGAG-T
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCT-GAGGT
EST: gi|67023036|gb|CO451785.1|CO451785
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|84980759|gb|DW531108.1|DW531108
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211324557|gb|FL104648.1|FL104648
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|50325683|gb|CO520809.1|CO520809
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|78109161|gb|DV527578.1|DV527578
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67021275|gb|CO450024.1|CO450024
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31353828|gb|CD438185.1|CD438185
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18166360|gb|BM336199.1|BM336199
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|38502545|gb|CF972405.1|CF972405
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGAT-GGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18165956|gb|BM335795.1|BM335795
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211528308|gb|FL091444.1|FL091444
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGATGGATTGGCTAAAGACCAATGCCAGCCCTGAAGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|60347447|gb|DN214420.1|DN214420
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31351126|gb|CD435483.1|CD435483
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|5439487|gb|AI820408.1|AI820408
EST:     TTTGGGCTATTGGAACTGGTAAAGNTGCCACCCCAGCTCAGGCTCAGGAA                         G-GCACGCCTCC
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCC
EST: gi|211405979|gb|FL414494.1|FL414494
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCNTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCC-TGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
EST: gi|18384965|gb|BM418164.1|BM418164
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67011680|gb|CO440429.1|CO440429
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|83278900|gb|DV942908.1|DV942908
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|8551638|gb|BE128809.1|BE128809
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAAGCTCAGGAA                         GTGCACGCCTCCCTGAG
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAG
EST: gi|67017841|gb|CO446590.1|CO446590
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGNAGG-ATTGGCTAAAGACCAATGCCAGCCCCTGAG-
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTG-AGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGG
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31350868|gb|CD435225.1|CD435225
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211191318|gb|FL465408.1|FL465408
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18166630|gb|BM336469.1|BM336469
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18164729|gb|BM334568.1|BM334568
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18163088|gb|BM332927.1|BM332927
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67020170|gb|CO448919.1|CO448919
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCANGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCCTGAGGT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCC-TGAGGT
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211522297|gb|FL091413.1|FL091413
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|18384001|gb|BM417201.1|BM417201
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|211213987|gb|FL471281.1|FL471281
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|17930054|gb|BM267014.1|BM267014
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67021862|gb|CO450611.1|CO450611
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|29544188|gb|CB604568.1|CB604568
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|71332087|gb|DR802949.1|DR802949
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCANGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|31352108|gb|CD436465.1|CD436465
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|101389975|gb|EB816919.1|EB816919
EST:     TTGGGCTATTGGAACTGGTAAAGTTGCCACCCCACCTCAAGCTCAAGGAA                         GTGCACCCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
genomic: TTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCA-GGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGT
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|93283118|gb|EB675382.1|EB675382
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|60348349|gb|DN215322.1|DN215322
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
EST: gi|89250828|gb|DY622614.1|DY622614
EST:     TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT
genomic: TTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 400

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 853

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1083

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 563

AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttt ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA