1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGACTGATGACTGGATTGAGTTTTACTCCAAGCATAGATTGGGTTACCAGTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttggaaaaagatgattaagttggtatttaccatttctctcacagcctgccattgttcttagctaagttttgctaagagtgtagtaactgattttttttctatcccttcttgcacaaattcctatgcacag
species | Zea mays |
transcript | GRMZM2G030299_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|76283912|gb|DV023480.1|DV023480
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: CGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|149108778|gb|EE189830.2|EE189830
genomic: CGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|60348350|gb|DN215323.1|DN215323
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|76288116|gb|DV027684.1|DV027684
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|78544199|gb|DV621697.1|DV621697
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|211523349|gb|FL468083.1|FL468083
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTGEST: gi|76283911|gb|DV023479.1|DV023479
genomic: GTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
EST: CGGCCATACTCGAAAAAG GTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
genomic: CGGCCATACTCGAAAAAGgtacagttgg ... ctatgcacagGTCAGCGGTTGATCAAGAATATCCGCCCACTTTTTGATGGAGCGGTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTGATGACTGGATTGAGTTTTACTCCAAGCATAGATTGGGTTACCAGTTGGAGTTGGCATCGAGACGATATGGAGATTCGGCCATACTCGAAAAAGgtacagttggaaaaagatgattaagttggtatttaccatttctctcacagcctgccattgttcttagctaagttttgctaagagtgtagtaactgattttttttctatcccttcttgcacaaattcctatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT