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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGTGGCCGTCGGGCTTCTTCAGCTGGCGCCCAAGAAGGTCACTCCGAGAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAGgtatgacttctgcctcgagtctgtgctgttgtgcgtgtgttttctcagtaatggaagctgcaatgcaacgctaatgttgtgtgtgcctgtgctctgcctgcag

Basic information

species Zea mays
transcript GRMZM2G029824_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029824_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g02590.2 (Oryza sativa), 5'ss of exon 7
GGTCGTGGCCGTCGGGCTTCTTCAGCTGGCGCCCAAGAAGGTCACTCCGAGAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAGgtatgacttctgcctcgagtctgtgctgttgtgcgtgtgttttctcagtaatggaagctgcaatgcaacgctaatgttgtgtgtgcctgt---gctctgcc-tgcag
 || |||||||| ||||||||||||||| | ||||||||| ||||||| || || ||||| || ||||| ||||||||||| || || |||||||||||||||         |   || ||||| |  |   |    |||| |   || |||   ||    | |   ||   ||| ||||      ||||     | |||| |||||
TGTGGTGGCCGTAGGGCTTCTTCAGCTGTCACCCAAGAAGATCACTCCAAGGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacc-------cactgaatctgttc-atccagtcaatgttcttggag-aattttagtgagactagcactggaattttgtactcaactgtcccattttgccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010688|gb|DT937858.1|DT937858
EST:     GAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAG                         CAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCG
genomic: GAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAGgtatgacttc ... ctgcctgcagCAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCG