1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCTGGAAGTGTTTGACTCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatccttgctatcttaacaagctagaatcatgctgtcttgagcattttggtatcgataaaatctacactgccctctagatctgaaaatggtatcttttgtgtttcag
species | Zea mays |
transcript | GRMZM2G028685_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAG GTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGGEST: gi|60339789|gb|DN206762.1|DN206762
genomic: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatcctt ... tgtgtttcagGTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
EST: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAG GTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGGEST: gi|101383529|gb|EB813820.1|EB813820
genomic: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatcctt ... tgtgtttcagGTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
EST: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAG GTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGGEST: gi|60343103|gb|DN210076.1|DN210076
genomic: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatcctt ... tgtgtttcagGTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
EST: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAG GTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGGEST: gi|60350264|gb|DN217237.1|DN217237
genomic: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatcctt ... tgtgtttcagGTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
EST: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAG GTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
genomic: TCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatcctt ... tgtgtttcagGTATCGTCTTTTTCCATGAATAAGCCATATGCCCATATGAGTGCGATCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGGAAGTGTTTGACTCGGAGCTTCTACTGAACGGTATTGTCACTCAGAAGCTAGAGTTCGCCAGgtacatccttgctatcttaacaagctagaatcatgctgtcttgagcattttggtatcgataaaatctacactgccctctagatctgaaaatggtatcttttgtgtttcag
- - - - - - - - - GGAGCT
- - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC