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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgtctattttcactggttctgttatcatgtttacag

Basic information

species Zea mays
transcript GRMZM2G028452_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 5'ss of exon 7
TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgtctattttcact----ggttctgttat-catgtttacag-------------------------------------------
      | ||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| | || |||||||||||||||||||||||||||||| |    ||  ||      ||||||   || ||| |||                                               
------ATGAGGGTAACTTGAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCAAGTGACCACAATGGAAACTTAACAAACCGTGTGATCACTTTGTGGTATAGgtatggaaacttcccatgaggaggttcttccattcatatttctcttactttcttttcattgttctctctctcttatttgtgtatgcag

upper sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G10960.1 (Glycine max), 5'ss of exon 6
TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgtctattttcactggttctgttatcatgtttacag----------------------------------------------------------------------
      | || |||||  | ||||||||||||||||| || ||| | ||||| || | ||| ||||||| ||| ||||| || ||||| ||||| || ||||| ||||| | | | |    | | | | | | ||  ||     ||                                                                      
------ATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGgtaatttatgtccataataggttt-taattttgacctaagttcttttgggagggttgcatcatgaacttatgcccatacacattattgatttatttcattatattattag

upper sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 6
TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgtctattttcactggttctgttatcatgtttacag----------------------------------------------------------------------
      | ||||| || |||||||| || |||||||| |||||  | ||||  ||    ||||| | ||||||||| || || ||||| |||||||||||||||||||||    |||    ||    | ||   | || |  | |                                                                       
------ATGAGGGAAATTTAAAGCTAGCGGATTTTGGGCTTGCTCGGTCATATTCTCATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAGgtat---gtatgcctacaaactttgaagttatatacaaaaaagtgacaaagaataagtattgcttatacgtgcagctttttctctacttatgcattgtttattgctgtag

upper sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 5'ss of exon 7
TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgt-ctattttcactggttctgttatcatgtttacag-------------------------------------------------------------------------------------
      | ||||| |  |||||||||||||||||||| |||||| | ||||| ||||| || || |||||||| ||||| || ||||| || |||||||||||||||||   |  ||  || ||    | |||| | |  |    ||                                                                                     
------ATGAGGGAATTTTAAAGCTTGCTGATTTTGGACTTGCACGGTCATTTTCCAGTGACCATAATGGAAATCTTACAAATCGTGTTATTACTTTGTGGTATAGgtaaaatattacattaacctcatgtgttttaaactgcctagctcaattgttgtgcatgttgcatcttttccaagaataagctccgcttttcatttagttgattcaggtttatattgatttgcatag