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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATAGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagtcgctgttaccacctacaaatctataccttctcttccttttgttttgtgattaattgcttgtctggatag

Basic information

species Zea mays
transcript GRMZM2G028353_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 6
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATAGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagtcgctgttaccacctacaaatctataccttctcttccttttgttt--tgtgattaattgcttgtctggatag
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||  || || ||||||| ||  ||||||| | |||   ||   |    ||  |   | |   ||     || |||||| |||  |  ||||
TAATTTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCCAAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatag

upper sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 6
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATAGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagtcgctgttaccacctacaaatctataccttctcttccttttgt-----tttgtgattaattgcttgtctggatag------
| |||||||| || ||||||||||| || |||||||||||||| || ||||| ||| |||| || || || || ||||| |||||| |||||||| |||||| ||| | |    | || |     ||| | | ||   |||||  |       | |||| |||||  ||  |   | ||       
TGATCTGTGAGATTTGGTTTGCCATTTCATGGATTCTTGATCAGTTTCCAAAATGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGCTGTCATTGAGgtcagt-gtttagcctacttcagtttctgtgcattaatttcctggtaggtaaatctgtgtttaatatctaataatggtatactcag